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Pipelines Collection

This page lists all supported and forthcoming pipelines on Aladdin platform. You can find descriptions, documentations, and source codes of pipelines here.

All

Transcriptomics

small RNAseq
bulk RNAseq (single organism)

Epigenetics

methylation sequencing

Microbiomics

rRNA amplicon-seq
metagenome sequencing

Genomics

genomic sequencing

RNAseq


Library Types:

bulk RNAseq (single organism)

Stringent QC checks on RNAseq libraries. Quantify and compare gene expression, and pathway analysis.

ampliseq


Library Types:

rRNA amplicon-seq

Identify, quantify and compare the taxonomic compositions of microbial communities through rRNA amplicon sequencing.

Methylcheck


Library Types:

methylation sequencing

QC, map and analyze methylation(bisulfite) sequencing data with bioinformatics tools.

shotgun


Library Types:

metatranscriptome sequencing
metagenome sequencing

Performs taxonomy profiling using shotgun sequencing.

smRNAseq


Library Types:

small RNAseq

Quantify and compare miRNA and other types of small RNA genes.

BSBolt


Library Types:

methylation sequencing

Analyze methylation sequencing data with BSBolt, a fast and scalable bisulfite sequencing analysis platform.

genomics


Library Types:

genomic sequencing

Process WGS, WES or gene panel NGS data, detect and annotate germline and somatic variants.

miqScore16S


Library Types:

rRNA amplicon-seq

Identify bias in microbiome experiments with the ZymoBIOMICS Microbial Community DNA Standard (16S amplicon-seq)

miqScoreShotgun


Library Types:

metagenome sequencing

Identify bias in microbiome experiments with the ZymoBIOMICS Microbial Community DNA Standard (shotgun metagnome sequencing)